Computing

The following computers are in use in the Imaging Group:

IT standard IOC platforms

Recommeded computers for Rack Mount/IOC replacement, SSF/Mini/IOC and Workstation/NX can be ordered following the instruction provided here.

Data Analysis and Storage

Station	Name	Product	Part list	Model	Quote
2-BM	tomo 1-2	MNJ15421064	cluster	Supermicro 740GP-TNRT node	cluster_quote
2-BM	tomo 1-2	MNJ15590206	cluster_ram	16x 128GB MEM-DR412L-SL01-ER32	cluster_ram
2-BM	tomo 3	MNJ15421064	cluster_01	Supermicro 740GP-TNRT node	cluster_quote_01
2-BM	tomo 4-5 (SXM-4)	MNJ16235754	cluster_02	Supermicro 220GQ-TNAR+ node	cluster_quote_02
2-BM	tomodata1	MNJ15508749	disk_array_01	SYS-220U-TNR Storage	disk_array_quote_01
2-BM	tomodata2	MNJ18897861	disk_array_02	SYS-220U-TNR Storage	disk_array_quote_02
2-BM	tomodata3	MNJ18897861	disk_array_03	SYS-220U-TNR Storage	disk_array_quote_03
eBERlight	eberproc1-2	MNJ16187026	eberlight_01	Supermicro 740GP-TNRT node	eberlight_02

Data Collection

Station	Name	Model	Product No.	Serial No.	Manual
2-BM-A	pg10ge	HP Z8 G4	3GF37UT#ABA	pg10ge label	pg10ge SM
2-BM-B	lyra	HP EliteDesk 800	P4K18UT#ABA	lyra label	lyra SM

For each machine part list at purchase time and for the list of supported hardware enter the serial numeber in the HP support web page.

Data Visualization

The default computer is handyn where the following software is installed:

Raw Data

To view the tomographic raw data we suggest to install Fiji and add the HDF plugin

Other options are hdfview or argos

To view the tomographic raw data we suggest to install Fiji and add the HDF plugin

Other options are hdfview or argos

Dragonfly

After your data are reconstructed you can visualize using Dragonfly.

Login at the beamline Linux machine and then type:

[tomo@handyn]$ cd /local/tomo/software/dragonfly
[tomo@handyn]$ ./Dragonfly